Here is a list of all documented class members with links to the class documentation for each member:
- GenerateNxsException()
: NxsBlock
 
- GenerateUnexpectedTokenNxsException()
: NxsBlock
 
- GetAlias()
: ScopedTwoDMatrix< T >
 
- GetAllDatatypeMappers()
: NxsCharactersBlock
 
- GetAllLabels()
: NxsTaxaBlockAPI
 
- GetAllowAugmentingOfSequenceSymbols()
: NxsCharactersBlock
 
- GetAllTitlesForBlock()
: NxsReader
 
- GetAssumptionsBlock()
: PublicNexusReader
 
- GetAssumptionsBlockTemplate()
: PublicNexusReader
 
- GetBlockIDCommandString()
: NxsBlock
 
- GetBlockName()
: NxsDistancesBlock
, NxsToken
, NxsTreesBlock
 
- GetBlockPriority()
: NxsReader
 
- GetBlockReaderForID()
: NxsDefaultPublicBlockFactory
, NxsCloneBlockFactory
, NxsBlockFactory
 
- GetBlocksFromLastExecuteInOrder()
: NxsReader
 
- GetCharactersBlock()
: PublicNexusReader
 
- GetCharactersBlockTemplate()
: PublicNexusReader
 
- GetCharBlockByTitle()
: NxsReader
 
- GetCharLabel()
: NxsCharactersBlock
 
- GetCharPartition()
: NxsAssumptionsBlock
 
- GetCharPartitionNames()
: NxsAssumptionsBlock
 
- GetCharSet()
: NxsAssumptionsBlock
 
- GetCharSetNames()
: NxsAssumptionsBlock
 
- GetComment()
: NxsToken
 
- GetContinuousValues()
: NxsCharactersBlock
 
- GetCurlyBracketedToken()
: NxsToken
 
- GetDataBlockTemplate()
: PublicNexusReader
 
- GetDataType()
: NxsUnalignedBlock
, NxsCharactersBlock
 
- GetDatatypeMapForMixedType()
: NxsCharactersBlock
 
- GetDatatypeName()
: NxsCharactersBlock
 
- GetDefaultCodonPosPartitionName()
: NxsCharactersBlock
 
- GetDefaultDoubleWeights()
: NxsTransformationManager
 
- GetDefaultIntWeights()
: NxsTransformationManager
 
- GetDefaultTypeName()
: NxsTransformationManager
 
- GetDefaultTypeSetName()
: NxsTransformationManager
 
- GetDefaultWeightSetName()
: NxsTransformationManager
 
- GetDefExSetName()
: NxsAssumptionsBlock
 
- GetDiscreteMatrixRow()
: NxsCharactersBlock
 
- GetDistance()
: NxsDistancesBlock
 
- GetDistancesBlock()
: PublicNexusReader
 
- GetDistancesBlockTemplate()
: PublicNexusReader
 
- GetDoubleQuotedToken()
: NxsToken
 
- GetDoubleWeights()
: NxsTransformationManager
 
- GetExcludedIndexSet()
: NxsCharactersBlock
 
- GetExSet()
: NxsAssumptionsBlock
 
- GetExSetNames()
: NxsAssumptionsBlock
 
- GetFileColumn()
: NxsToken
 
- GetFileLine()
: NxsToken
 
- GetFilePosition()
: NxsToken
 
- getFormatNames()
: MultiFormatReader
 
- GetFullTreeDescription()
: NxsTreesBlock
 
- GetGapModeSetting()
: NxsCharactersBlock
 
- GetGapSymbol()
: NxsCharactersBlock
 
- GetHighestStateCode()
: NxsDiscreteDatatypeMapper
 
- GetID()
: NxsBlock
 
- GetImpliedBlocks()
: NxsTreesBlock
, NxsUnalignedBlock
, NxsAssumptionsBlock
, NxsBlock
, NxsCharactersBlock
, NxsDistancesBlock
 
- GetImpliedBlocksConst()
: NxsBlock
 
- GetIndicesForLabel()
: NxsCharactersBlock
, NxsTaxaBlock
, NxsTreesBlock
 
- GetIndicesFromSetOrAsNumber()
: NxsLabelToIndicesMapper
 
- GetIndicesFromSets()
: NxsLabelToIndicesMapper
 
- GetInfo()
: NxsSimpleEdge
 
- GetInternalRepresentation()
: NxsCharactersBlock
, NxsUnalignedBlock
 
- GetIntType()
: NxsTransformationManager
 
- GetIntWeights()
: NxsTransformationManager
 
- GetItems()
: NxsCharactersBlock
 
- GetLastStoredBlockByID()
: NxsReader
 
- GetLastStoredCharactersBlock()
: NxsReader
 
- GetLastStoredTaxaBlock()
: NxsReader
 
- GetLastStoredTreesBlock()
: NxsReader
 
- GetMatchcharSymbol()
: NxsCharactersBlock
 
- GetMaximalStateSetOfColumn()
: NxsCharactersBlock
 
- GetMaxIndex()
: NxsTaxaBlock
 
- GetMaxObsNumStates()
: NxsCharactersBlock
 
- GetMaxTaxonLabelLength()
: NxsTaxaBlockAPI
, NxsTaxaBlock
 
- GetMissingSymbol()
: NxsCharactersBlock
, NxsDistancesBlock
, NxsUnalignedBlock
 
- GetName()
: NxsFullTreeDescription
 
- GetNamedStateSetOfColumn()
: NxsCharactersBlock
 
- GetNChar()
: NxsCharactersBlock
 
- GetNchar()
: NxsDistancesBlock
 
- GetNCharTotal()
: NxsCharactersBlock
 
- getNCLCatchesSignals()
: NxsReader
 
- GetNewick()
: NxsFullTreeDescription
 
- GetNextToken()
: NxsToken
 
- GetNexus()
: NxsBlock
 
- GetNTax()
: NxsTaxaBlockAPI
, NxsTaxaBlock
 
- GetNTaxTotal()
: NxsTaxaBlockAPI
, NxsTaxaBlock
, NxsUnalignedBlock
 
- GetNTaxWithData()
: NxsUnalignedBlock
 
- GetNumActiveChar()
: NxsCharactersBlock
 
- GetNumActiveTaxa()
: NxsTaxaBlockAPI
, NxsTaxaBlock
 
- GetNumAssumptionsBlocks()
: PublicNexusReader
 
- GetNumChar()
: NxsCharactersBlock
 
- GetNumCharactersBlocks()
: PublicNexusReader
 
- GetNumCharPartitions()
: NxsAssumptionsBlock
 
- GetNumCharSets()
: NxsAssumptionsBlock
 
- GetNumDefaultTree()
: NxsTreesBlock
 
- GetNumDistancesBlocks()
: PublicNexusReader
 
- GetNumEliminated()
: NxsCharactersBlock
 
- GetNumEquates()
: NxsCharactersBlock
, NxsUnalignedBlock
 
- GetNumExSets()
: NxsAssumptionsBlock
 
- GetNumIncludedChars()
: NxsCharactersBlock
 
- GetNumMatrixCols()
: NxsCharactersBlock
 
- GetNumMatrixRows()
: NxsUnalignedBlock
, NxsCharactersBlock
 
- GetNumObsStates()
: NxsCharactersBlock
 
- getNumSignalIntsCaught()
: NxsReader
 
- GetNumStateCodes()
: NxsDiscreteDatatypeMapper
 
- GetNumStates()
: NxsCharactersBlock
, NxsUnalignedBlock
 
- GetNumTaxaBlocks()
: PublicNexusReader
 
- GetNumTaxonLabels()
: NxsTaxaBlockAPI
, NxsTaxaBlock
 
- GetNumTaxSets()
: NxsAssumptionsBlock
 
- GetNumTrees()
: NxsTreesBlock
 
- GetNumTreesBlocks()
: PublicNexusReader
 
- GetNumUnalignedBlocks()
: PublicNexusReader
 
- GetNumUnknownBlocks()
: PublicNexusReader
 
- GetNumUserEquates()
: NxsCharactersBlock
 
- GetNxsTransformationManagerRef()
: NxsCharactersBlock
 
- GetObsStates()
: NxsCharactersBlock
 
- GetOneStateForCode()
: NxsDiscreteDatatypeMapper
 
- GetOrderedType()
: NxsTransformationManager
 
- GetOriginalDataType()
: NxsUnalignedBlock
, NxsCharactersBlock
 
- GetOriginalTaxaBlock()
: NxsReader
 
- GetParentheticalToken()
: NxsToken
 
- GetProcessAllTreesDuringParse()
: NxsTreesBlock
 
- GetQuoted()
: NxsString
, NxsToken
 
- GetRealType()
: NxsTransformationManager
 
- GetSetOfAllUsedBlocks()
: NxsReader
 
- GetSimpleContinuousValue()
: NxsCharactersBlock
 
- GetStandardTypeNames()
: NxsTransformationManager
 
- GetState()
: NxsCharactersBlock
 
- GetStateCodeStored()
: NxsDiscreteDatatypeMapper
 
- GetStateLabel()
: NxsCharactersBlock
 
- GetStateSetForCode()
: NxsDiscreteDatatypeMapper
 
- GetStatesFormat()
: NxsCharactersBlock
 
- GetStateVectorForCode()
: NxsDiscreteDatatypeMapper
 
- GetSymbols()
: NxsCharactersBlock
, NxsUnalignedBlock
 
- GetTaxaBlock()
: PublicNexusReader
 
- GetTaxaBlockByTitle()
: NxsReader
 
- GetTaxaBlockFactory()
: NxsReader
 
- GetTaxaBlockTemplate()
: PublicNexusReader
 
- GetTaxaLinkStatus()
: NxsTaxaBlockSurrogate
 
- GetTaxonLabel()
: NxsCharactersBlock
, NxsTaxaBlockAPI
, NxsTaxaBlock
 
- GetTaxSet()
: NxsAssumptionsBlock
 
- GetTaxSetNames()
: NxsAssumptionsBlock
 
- GetToken()
: NxsToken
 
- GetTokenAsCStr()
: NxsToken
 
- GetTokenLength()
: NxsToken
 
- GetTokenReference()
: NxsToken
 
- GetTranslatedTreeDescription()
: NxsTreesBlock
 
- GetTreeDescription()
: NxsTreesBlock
 
- GetTreeName()
: NxsTreesBlock
 
- GetTreesBlock()
: PublicNexusReader
 
- GetTreesBlockByTitle()
: NxsReader
 
- GetTreesBlockTemplate()
: PublicNexusReader
 
- GetTreeTokens()
: NxsFullTreeDescription
 
- GetTriangle()
: NxsDistancesBlock
 
- GetTypeNames()
: NxsTransformationManager
 
- GetTypeSetNames()
: NxsTransformationManager
 
- GetUnalignedBlock()
: PublicNexusReader
 
- GetUnalignedBlockTemplate()
: PublicNexusReader
 
- GetUnknownBlock()
: PublicNexusReader
 
- GetUnknownBlockTemplate()
: PublicNexusReader
 
- GetUnorderedType()
: NxsTransformationManager
 
- GetUsedBlocks()
: NxsReader
 
- GetUsedBlocksInOrder()
: NxsReader
 
- GetUserTypeNames()
: NxsTransformationManager
 
- GetWeightForIndex()
: NxsTransformationManager
 
- GetWeightSetNames()
: NxsTransformationManager